*** Packages to explore the earth *** CRAN Task View: Analysis of Spatial Data - Spatial Analysis related resources.
Leaflet - One of the most popular JavaScript libraries interactive maps.
ggmap - Plotting maps in R with ggplot2.
REmap - R interface to the JavaScript library ECharts for interactive map data visualization.
sf - Improved Classes and Methods for Spatial Data.
sp - Classes and Methods for Spatial Data.
rgeos - Interface to Geometry Engine - Open Source
rgdal - Bindings for the Geospatial Data Abstraction Library
maptools - Tools for Reading and Handling Spatial Objects
gstat - Spatial and spatio-temporal geostatistical modelling, prediction and simulation.
spacetime - R classes and methods for spatio-temporal data.
RColorBrewer - Provides color schemes for maps
spatstat - Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
spdep - Spatial Dependence: Weighting Schemes, Statistics and Models
tigris - Download and use Census TIGER/Line shapefiles in R
GWmodel - Geographically-Weighted Models

5.1.1 ggplot2

*** https://www.r-spatial.org/r/2018/10/25/ggplot2-sf.html

https://www.springer.com/us/book/9780387981413

*** https://wilkelab.org/practicalgg/

http://www.cookbook-r.com/Graphs/Colors_(ggplot2)/

*** https://www.r-spatial.org/r/2018/10/25/ggplot2-sf.html

https://ggplot2.tidyverse.org/reference/

https://ggplot2.tidyverse.org/

https://github.com/tidyverse/ggplot2/wiki/Legend-Attributes

https://ggplot2-book.org/

R Bootcamp ggplot
https://r-bootcamp.netlify.com/chapter1

*** https://www.garrickadenbuie.com/blog/custom-discrete-color-scales-for-ggplot2/

plothelper: New Plots Based on ‘ggplot2’ and Functions to Create Regular Shapes
https://cran.r-project.org/web/packages/plothelper/index.html

*** http://zevross.com/blog/2014/08/04/beautiful-plotting-in-r-a-ggplot2-cheatsheet-3/

http://zevross.com/blog/2014/07/16/mapping-in-r-using-the-ggplot2-package/

Twitter #ggplot2 challenge https://mohdbilal87.github.io/dataviz-r/

https://stackoverflow.com/questions/58899810/r-ggplot-force-facet-grid-margin-to-be-on-the-next-row

https://community.rstudio.com/t/how-to-get-ggplot-in-shiny-to-recognize-input-as-a-vector/46755

*** https://geocompr.github.io/post/2019/ggplot2-inset-maps/

https://medium.com/@urban_institute/why-the-urban-institute-visualizes-data-with-ggplot2-46d8cfc7ee67

https://stackoverflow.com/questions/58977671/how-to-increase-the-ggplot2-figures-resolution

https://cedricscherer.netlify.com/2019/08/05/a-ggplot2-tutorial-for-beautiful-plotting-in-r/#toc

https://simplystatistics.org/2019/08/28/you-can-replicate-almost-any-plot-with-ggplot2/

https://www.r-bloggers.com/choropleth-map-in-ggplot2/

https://ggplot2tutor.com/streetmaps/streetmaps/

https://www.datasciencecentral.com/profiles/blogs/creating-maps-in-r-using-ggplot2-and-maps-libraries

https://github.com/dkahle/ggmap

choropleth ggplot - Google Search Results

Interactively explore your data by visualizing it with the ggplot2 package
https://cran.r-project.org/web/packages/esquisse/readme/README.html

/////////////
R choropleth ggplot ggplot(data = UK) +
aes(x = long, y = lay, group = group) +
geom_polygon(fill = #004529, alpha = 0.75) +
geom_ point(data = postcodes,
aes(y = latitude, x = longitude, group = group),
color = #f7fcb9, size = 0.5) +
coord_map()
/////////////

Accelerate your plots with ggforce
https://rviews.rstudio.com/2019/09/19/intro-to-ggforce/

Chapter 10: GGplot for Scatterplots & Density Plots
https://ademos.people.uic.edu/Chapter10.html

Boxplots and Bar Graphs
https://ademos.people.uic.edu/Chapter11.html

5.1.2 sf

http://www.geospatialtrainingsolutions.co.uk/spatial-r-moving-from-sp-to-sf/

https://stackoverflow.com/questions/43456524/how-to-find-which-polygon-a-point-belong-to-via-sf

https://gis.stackexchange.com/questions/282750/identify-polygon-containing-point-with-r-sf-package/318629#318629

https://gis.stackexchange.com/questions/272447/equivalent-of-sp-packages-point-in-polygon-overing-using-sf

https://www.r-spatial.org/r/2018/10/25/ggplot2-sf.html

https://stackoverflow.com/questions/58795903/row-wise-operation-with-sf#answer-58801348

https://www.r-spatial.org/r/2018/10/25/ggplot2-sf.html

5.2 Intro to Spatial Analysis

Spatial Cheatsheet

Intro to R Spatial Analysis - Nick Bearman

Intro to R Spatial Analysis- workbook - Nick Bearman

*** R Spatial on github ***

https://cran.r-project.org/doc/contrib/intro-spatial-rl.pdf

5.3 R as GIS

R QGIS

http://www.nickeubank.com/gis-in-r/

https://github.com/Pakillo/R-GIS-tutorial/blob/master/R-GIS_tutorial.md

https://www.jessesadler.com/post/gis-with-r-intro/

*** https://north-road.github.io/qgis-processing-r/ ***

https://www.google.ca/search?q=r+spatial+tutorial&ie=UTF-8&oe=UTF-8&hl=en-ca&client=safari

https://www.google.ca/search?q=r+gtable&ie=UTF-8&oe=UTF-8&hl=en-ca&client=safari

https://rspatial.org/raster/analysis/8-pointpat.html

https://rspatial.org/_sources/analysis/8-pointpat.R.txt

https://channel9.msdn.com/Events/useR-international-R-User-conferences/useR-International-R-User-2017-Conference/mapedit-interactive-manipulation-of-spatial-objects

*** https://cran.r-project.org/web/views/Spatial.html ***

https://awesome-r.com/#awesome-r-spatial

https://www.r-bloggers.com/elevation-profiles-in-r/

https://geography.uoregon.edu/GeogR/topics

*** http://www.nickeubank.com/gis-in-r/ ***

*** Geocomputation with R - Robin Lovelace ***
https://geocompr.robinlovelace.net/

https://geocompr.github.io/geocompkg/articles/us-map.html

https://geocompr.github.io/

https://geocompr.github.io/vignettes/

https://spatialanalysis.github.io/geodaData/

https://cran.r-project.org/doc/Rnews/

https://journal.r-project.org/

*** http://www.spatialanalysisonline.com/index.html ***

*** http://www.spatialanalysisonline.com/HTML/index.html ***

*** https://atlan.com/courses/introduction-to-gis-r/overview/?__hstc=78729675.f49e41239e1d36fecd0c14c710516d14.1567644668294.1567646982413.1572864193809.3&__hssc=78729675.1.1572864193809&submissionGuid=719aeeb1-0877-492e-b00e-e1900eec9a1c ***

*** https://fishandwhistle.net/post/2019/bathymetry-lake-volume-estimation-using-r/ ***

*** https://github.com/PennMUSA/MasterClass2019_3DMappingAndViz/blob/master/MusaMasterclass.md ***

*** https://geodacenter.github.io/workbook/6a_local_auto/lab6a.html#local-moran ***

A method for computing hourly, historical, terrain‐corrected microclimate anywhere on Earth
https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.13330

5.4 Mapping in R

5.4.1 Cartography and Mapping in R

Making maps with R
https://geocompr.robinlovelace.net/adv-map.html

How to Create State and County Maps Easily in R — Part 2
https://medium.com/@urban_institute/how-to-create-state-and-county-maps-easily-in-r-part-2-d21d57310c50

https://github.com/Robinlovelace/Creating-maps-in-R

http://www.molecularecologist.com/2012/09/making-maps-with-r/

https://rgeomatic.hypotheses.org/1205

https://cran.r-project.org/web/packages/cartography/index.html

https://cran.r-project.org/web/packages/cartography/vignettes/cartography.html

https://stackoverflow.com/questions/55924348/how-do-i-plot-the-map-of-east-africa-kenya-uganda-and-tanzania-in-r-with-libr

https://stackoverflow.com/questions/42281443/draw-multiple-object-of-class-tmap-with-just-one-common-legend

*** https://github.com/tts/mapchallenge

*** http://www.molecularecologist.com/2012/09/making-maps-with-r/

*** https://github.com/lina2497/Giftmap

*** https://git.rud.is/hrbrmstr/y2019-30daymapchallenge

https://github.com/tts/mapchallenge/blob/master/globe.R

https://gis.stackexchange.com/questions/48828/making-beautiful-maps-in-r

https://gis.stackexchange.com/questions/3083/seeking-examples-of-beautiful-maps/45518#45518

Telling the story of Indiana lake water quality with interactive web-based mapping and data visualization
https://github.com/corysauve/NALMS-2019

Plot US roads, coloring each by its designation (e.g. Street, Road, Avenue)
*** https://github.com/erdavis1/RoadColors

https://www.google.ca/search?q=r+add+inset+map&ie=UTF-8&oe=UTF-8&hl=en-ca&client=safari

https://dominicroye.github.io/en/

*** https://geocompr.robinlovelace.net/adv-map.html
*** https://geocompr.robinlovelace.net/

5.5 Data Frames

R Data Frame: Create, Append, Select, Subset
https://www.guru99.com/r-data-frames.html

https://stackoverflow.com/questions/58243042/how-to-subset-one-dataframe-and-make-it-equal-to-corresponding-dataframes-in-r

R: Add new column based on condition with multiple columns
https://stackoverflow.com/questions/58696140/r-add-new-column-based-on-condition-with-multiple-columns

*** https://stackoverflow.com/questions/58833840/making-a-plot-with-geom-lines-of-my-data-frame ***

Introduction to the Subset function
https://ihaddadenfodil.com/post/introduction_to_the_subset_function/introduction-to-the-subset-function/

5.6 Density - KDE

https://vita.had.co.nz/papers/density-estimation.pdf

https://stat.ethz.ch/R-manual/R-devel/library/stats/html/density.html

https://github.com/mountainMath/dotdensity

5.7 Cluster Analysis

Cluster Analysis (DataCamp)
https://www.statmethods.net/advstats/cluster.html

https://data.cdrc.ac.uk/tutorial/creating-a-geodemographic-classification-using-k-means-clustering-in-r

5.8 Spatial autocorrelation

https://rspatial.org/raster/rosu/Chapter7.html

https://rspatial.org/raster/rosu/index.html

https://github.com/spatialanalysis/geodaDatav

https://spatialanalysis.github.io/geodaData/

https://github.com/lixun910/rgeoda

*** https://cengel.github.io/R-spatial/ ***

https://www.gislounge.com/free-introduction-to-gis-in-r-online-course/

*** https://geocompr.robinlovelace.net/eco.html#exercises-10 ***

*** https://github.com/r-spatial ***

https://github.com/r-spatial/RSAGA

*** https://github.com/tylerjtran/populationLines/blob/master/populationLinesScript.R ***

https://spatial.ly/2017/04/population-lines-how-and-why-i-created-it/

https://www.datacamp.com/community/tutorials/r-formula-tutorial

https://www.datacamp.com/community/tutorials/r-web-scraping-rvest

https://www.r-spatial.org/

*** https://geocompr.robinlovelace.net/index.html ***

https://github.com/MicheleTobias/R-Projections-Workshop

*** https://cran.r-project.org/doc/contrib/intro-spatial-rl.pdf ***

https://cengel.github.io/rspatial/

https://github.com/nickbearman/intro-r-spatial-analysis

https://github.com/nickbearman/r-geodemographic-analysis-20140710

5.9 Regression Analysis & Modeling

https://bookdown.org/ndphillips/YaRrr/regression-analysis.html

*** https://www.r-bloggers.com/r-tutorial-series-simple-linear-regression/

*** http://www.cookbook-r.com/Statistical_analysis/Regression_and_correlation/ ***

https://github.com/matackett/talks/blob/master/presentations/wsds2019-r-git-regression.pdf

http://www.cookbook-r.com/Statistical_analysis/Regression_and_correlation/

*** http://www.r-tutor.com/elementary-statistics/simple-linear-regression

Simple linear regression
http://rtutorialseries.blogspot.com/2009/11/r-tutorial-series-simple-linear.html

multiple linear regression
http://rtutorialseries.blogspot.com/2009/12/r-tutorial-series-multiple-linear.html

Graphic Analysis of Regression Assumptions
http://rtutorialseries.blogspot.com/2009/12/r-tutorial-series-graphic-analysis-of.html

Regression With Interaction Variables
http://rtutorialseries.blogspot.com/2010/01/r-tutorial-series-regression-with.html

Regression With Categorical Variables
http://rtutorialseries.blogspot.com/2010/02/r-tutorial-series-regression-with.html

Basic Polynomial Regression
http://rtutorialseries.blogspot.com/2010/02/r-tutorial-series-basic-polynomial.html

Hierarchical Linear Regression
http://rtutorialseries.blogspot.com/2010/01/r-tutorial-series-basic-hierarchical.html

Model basics
*** https://r4ds.had.co.nz/model-basics.html

*** https://www.r-bloggers.com/r-tutorial-series-simple-linear-regression/

*** https://www.r-bloggers.com/how-to-perform-a-logistic-regression-in-r/

*** https://data-flair.training/blogs/r-linear-regression-tutorial/

https://socialsciences.mcmaster.ca/jfox/Books/Companion-1E/index.html

https://socialsciences.mcmaster.ca/jfox/Books/Companion/downloads.html

Fitting Linear Models
https://socialsciences.mcmaster.ca/jfox/Books/Companion/scripts/chap-4.R

*** Statistical modelling 1: Simple linear models
https://jacintak.github.io/biostats/biostats-GLM1.html
https://jacintak.github.io/biostats/biostats-GLM2.html
https://jacintak.github.io/biostats/biostats-GLM2.html

https://jacintak.github.io/colRoz/

5.10 Spatial Data

BC Data - An R package for searching & retrieving data from the B.C. Data Catalogue

5.11 Time Series Analysis

https://ademos.people.uic.edu/Chapter23.html

** 14.1 Representing Time Series Data R cookbook pg 356
https://rc2e.com/timeseriesanalysis

Time Series and Forecasting
https://www.statmethods.net/advstats/timeseries.html

https://cran.r-project.org/web/views/TimeSeries.html

https://www.analyticsvidhya.com/blog/2015/12/complete-tutorial-time-series-modeling/

https://livebook.manning.com/book/r-in-action-third-edition/chapter-3/v-1/1

https://www.statmethods.net/advstats/timeseries.html

https://a-little-book-of-r-for-time-series.readthedocs.io/en/latest/src/timeseries.html

https://buildmedia.readthedocs.org/media/pdf/a-little-book-of-r-for-time-series/latest/a-little-book-of-r-for-time-series.pdf

http://r-statistics.co/Time-Series-Analysis-With-R.html

https://www.manning.com/books/r-in-action-second-edition?a_bid=5c2b1e1d&a_aid=RiA2ed

*** http://www.cookbook-r.com/Scripts_and_functions/Measuring_elapsed_time/

https://stackoverflow.com/questions/13073686/interpolating-timeseries

http://www.r-gators.com/2018/01/31/wildlife-tracking-data-in-r/

https://www.r-bloggers.com/dangerous-streets-of-bratislava-animated-maps-using-open-data-in-r/

https://fishandwhistle.net/post/2019/depth-time-heatmaps/

https://www.datacamp.com/courses/introduction-to-time-series-analysis

https://www.datacamp.com/community/tutorials/time-series-r

https://github.com/oscarperpinan/spacetime-vis

https://www.crcpress.com/Displaying-Time-Series-Spatial-and-Space-Time-Data-with-R-Second-Edition/Lamigueiro/p/book/9781138089983#googlePreviewContainer

** Cluster multiple time series using K-means
https://www.brodrigues.co/blog/2019-10-12-cluster_ts/

*** Apps for creating Landsat time series animations
https://jdbcode.github.io/Snazzy-EE-TS-GIF/

*** https://www.r-bloggers.com/time-series-forecasting-with-random-forest/amp/#click=https://t.co/3yM9AoHLCl

5.12 Census

https://github.com/hrecht/censusapi

https://github.com/walkerke/tidycensus

https://www.census.gov/programs-surveys/geography.html

*** https://github.com/mountainMath?tab=repositories

*** https://github.com/mountainMath/cancensus

https://mountainmath.github.io/cancensus/index.html

https://mountainmath.github.io/cancensus/

https://mountainmath.github.io/cancensus/articles/cancensus.html

https://cran.r-project.org/web/packages/cancensus/vignettes/cancensus.html

https://censusmapper.ca/

*** https://onlineacademiccommunity.uvic.ca/mreumcensusdatatutorial/

https://github.com/walkerke/tidycensus

https://github.com/hrecht/censusapi

*** https://news.communitech.ca/how-to-access-statscan-data-through-their-new-api/

https://github.com/mountainMath/every_city_canada/blob/master/R/every_city_canada.R

https://wizard.unbc.ca/record=e1000099%7ES3

*** https://github.com/mountainMath/cansim

https://cran.r-project.org/web/packages/CANSIM2R/CANSIM2R.pdf

Count trees per census block NY

6 Color palettes

Comprehensive list of color palettes available in r
https://github.com/EmilHvitfeldt/r-color-palettes

Paletteer: Collection of most color palettes in a single R package
https://github.com/EmilHvitfeldt/paletteer

Palettes {grDevices} Create a vector of n contiguous colors
https://stat.ethz.ch/R-manual/R-devel/library/grDevices/html/palettes.html

The viridis color palettes
https://cran.r-project.org/web/packages/viridis/vignettes/intro-to-viridis.html

Using colors in R - Jenny Bryan https://www.stat.ubc.ca/~jenny/STAT545A/block14_colors.html

a California-inspired package of color palettes
https://github.com/an-bui/calecopal

https://cran.r-project.org/web/packages/viridis/vignettes/intro-to-viridis.html

https://cran.r-project.org/web/packages/unikn/vignettes/colors.html

https://github.com/EmilHvitfeldt/r-color-palettes

http://www.stat.columbia.edu/~tzheng/files/Rcolor.pdf

*** Top R Color Palettes To Know For Great Data Visualization
https://www.datanovia.com/en/blog/top-r-color-palettes-to-know-for-great-data-visualization/

https://www.nceas.ucsb.edu/~frazier/RSpatialGuides/colorPaletteCheatsheet.pdf

https://www.highcharts.com/docs/export-module/client-side-export

https://jsfiddle.net/gh/get/jquery/1.11.0/highslide-software/highcharts.com/tree/master/samples/highcharts/exporting/offline-download-demo/

*** Custom palette from picture
https://github.com/AndreaCirilloAC/paletter

https://github.com/aljrico/harrypotter

https://github.com/dill/beyonce

https://nschiett.github.io/fishualize/index.html…

https://github.com/karthik/wesanderson

https://github.com/leonawicz/legocolors

https://vankesteren.github.io/rijkspalette/

https://github.com/bhaskarvk/colormap

https://stackoverflow.com/questions/15282580/how-to-generate-a-number-of-most-distinctive-colors-in-r

https://github.com/nschiett/fishualize

https://nschiett.github.io/fishualize/articles/overview_colors.html

R package to generate colors from a list of 44 pre-defined palettes
https://github.com/bhaskarvk/colormap
https://bhaskarvk.github.io/colormap/

EVALUATION OF THE NEW PALETTE() FOR R
https://nowosad.github.io/post/cbc-bp1/
https://developer.r-project.org/Blog/public/2019/11/21/a-new-palette-for-r/index.html
https://github.com/EmilHvitfeldt/quickpalette

Scales
https://canvas.instructure.com/courses/946353/pages/scales?module_item_id=7585934

https://serialmentor.com/dataviz/color-pitfalls.html

Automatic Generation of Qualitative Color Palettes
https://jolars.github.io/qualpalr/

http://www.stat.columbia.edu/~tzheng/files/Rcolor.pdf

7 R Books On-line

Advanced R - Hadley Wickham

R Markdown: The Definitive Guide

R in Action

Intro to R - course booklet

An Introduction to R for Spatial Analysis and Mapping - Google Books

*** Beyond Spreadsheets with R ***

9 Visualizing data: Plotting

R for Dummies

R for Data Science by Hadley Wickham and Garrett Grolemund

Getting started in R and RStudio

*** Geocomputation with R - Robin Lovelace ***
https://geocompr.robinlovelace.net/

The Art of R Programming
http://diytranscriptomics.com/Reading/files/The%20Art%20of%20R%20Programming.pdf

A Language, not a Letter: Learning Statistics in R - 27 chapters
https://ademos.people.uic.edu/index.html

What They Forgot to Teach You About R - Jennifer Bryan
https://rstats.wtf/

An Introduction to Statistical Learning with Applications in R
http://faculty.marshall.usc.edu/gareth-james/ISL/
http://faculty.marshall.usc.edu/gareth-james/ISL/ISLR%20Seventh%20Printing.pdf

YaRrr! The Pirate’s Guide to R
https://bookdown.org/ndphillips/YaRrr/

A Handbook of Statistical Analyses Using R
http://www.ecostat.unical.it/tarsitano/Didattica/LabStat2/Everitt.pdf

7.1 R Cookbook

R Graphics Cookbook

R Graphics Cookbook, 2nd edition
https://r-graphics.org/

Manipulating Data - R Cookbook

*** Debugging a script or function - R Cookbook

*** Getting a list of functions and objects in a package - R Cookbook

Output to a file - R Cookbook

Fonts - R Cookbook

Graphs - R Cookbook

Manipulating Data - R Cookbook

Variables - R Cookbook

Working with NULL and NA - R Cookbook

8 R Stats Mentors

8.1 Hadley Wickham Resources

Advanced R - Hadley Wickham

R for Data Science, Garrett Grolemund, Hadley Wickham

*** https://adv-r.hadley.nz/translation.html

*** https://github.com/hadley

https://adv-r.hadley.nz/

*** https://github.com/hadley/stats337

Video of Hadley Wickham’s Keynote address at rstudio::conf 2017

Video /slides of Hadley Wickham’s Keynote address at rstudio::conf 2017

Style Guide - Hadley Wickham

The tidyverse style guide - Hadley Wickham
*** https://style.tidyverse.org/

8.2 Jenny Bryan Resources

https://github.com/jennybc
https://jennybryan.org/code/
https://stat545.com/

What They Forgot to Teach You About R - Jennifer Bryan
https://rstats.wtf/

9 Climate & Weather

GWEX: Multi-Site Stochastic Models for Daily Precipitation and Temperature
https://cran.r-project.org/web/packages/GWEX/index.html

10 R & Biodiversity

Tree ring data
https://github.com/AndyBunn/dplR

http://remote-sensing.eu/new-r-package-to-visualize-remote-sensing-data-and-movement-tracks-movevis/
https://www.google.ca/search?client=safari&hl=en-ca&sxsrf=ACYBGNSYGBtwRssLcvZP7cbbqaYP7PPYbw%3A1573987721748&ei=iSXRXfyVLYGd-gTqo6bgBA&q=R+moveVis&oq=R+moveVis&gs_l=mobile-gws-wiz-serp.3..35i39j0j0i8i30.7461.8036..8509…0.1..0.84.238.3……0….1………0i71j35i304i39j0i7i30j0i8i7i30.irXMirHqdoY

http://animove.org/
http://animove.org/software-and-data/

10.1 iNaturalist

https://github.com/WendyAnthony/rinat

*** https://cran.r-project.org/web/packages/rinat/vignettes/rinatVignette.html

https://github.com/ropensci/rinat

https://docs.ropensci.org/rinat/

https://www.inaturalist.org/pages/api+reference

https://api.inaturalist.org/v1/docs/

https://ropensci.org/blog/2014/03/26/rinat/

https://rdrr.io/cran/rinat/man/get_inat_taxon_stats.html

https://www.rdocumentation.org/packages/rinat/versions/0.1.4

https://inaturalist.nz/pages/download-data-nz

https://rdrr.io/cran/rinat/man/get_inat_user_stats.html

10.2 Plantnet biodiversity app

*** https://github.com/plantnet
https://plantnet.org/en/

10.3 Phenocam

https://www.neonscience.org/phenocam-intro-series

10.4 R Openscience

http://tuijasonkkila.fi/blog/2014/01/mapping-red-listed-rainforest-tree-species/

https://ropensci.org/packages/

https://github.com/ropensci/rebird

https://github.com/ropensci/geojsonio

https://github.com/ropensci/rgbif

https://github.com/ropensci/pdftools

https://github.com/ropenscilabs/syn

*** https://github.com/OpenScienceMOOC/Module-3-Reproducible-Research-and-Data-Analysis/blob/master/key_elements.md

https://github.com/OpenScienceMOOC/Module-5-Open-Research-Software-and-Open-Source/tree/master/content_development

MtreeRing: An R package with graphical user interface for automatic measurement of tree ring widths using image processing techniques
https://www.sciencedirect.com/science/article/pii/S1125786519301006?dgcid=raven_sd_aip_email
https://cran.r-project.org/web/packages/MtreeRing/index.html
https://github.com/ropensci/MtreeRing
https://ropensci.github.io/MtreeRing/

11 Open Air - Pollution

*** Tools for the Analysis of Air Pollution Data air pollution, hourly time series data
https://rdrr.io/cran/openair/man/openair.html
https://cran.r-project.org/web/packages/openair/index.html
https://cran.r-project.org/web/packages/openair/openair.pdf
http://dirk.eddelbuettel.com/cranberries/cran/updated/index.html
https://r-forge.r-project.org/projects/openair/
http://www.openair-project.org/
http://davidcarslaw.github.io/openair/
https://github.com/davidcarslaw/openair

12 R Stats

https://stat545.com/
https://stat545.stat.ubc.ca/
https://stat545guidebook.netlify.com/

http://www.r-tutor.com/elementary-statistics

https://rfortherestofus.com/2019/10/how-to-make-functions-in-r/

https://medium.com/analytics-vidhya/advanced-data-wrangling-in-r-4-f98693b92851

https://medium.com/analytics-vidhya/group-manipulation-in-r-3-5554a0c1b544?

https://medium.com/analytics-vidhya/statistical-visualization-in-r-2-9e9070bcdecf?

https://medium.com/analytics-vidhya/many-ways-of-reading-data-into-r-1-52b02825cb27?

13 Data Prep

*** Introduction to Spatial Data Types in R
http://www.rpubs.com/cengel248/172289

https://www.computerworld.com/article/2921176/great-r-packages-for-data-import-wrangling-visualization.html

** https://geanders.github.io/RProgrammingForResearch/

*** https://geanders.github.io/RProgrammingForResearch/entering-and-cleaning-data-1.html

4 data wrangling tasks in R for advanced beginners
https://www.computerworld.com/article/2486425/business-intelligence-4-data-wrangling-tasks-in-r-for-advanced-beginners.html

*** http://milton-the-cat.rocks/learnr/r/r_getting_started/#section-getting-data-into-rstudio

https://ihaddadenfodil.com/post/three_warys_to_get_a_summary_of_your_data/three-ways-to-get-a-summary-of-your-data/

*** https://www.computerworld.com/article/2921176/great-r-packages-for-data-import-wrangling-visualization.html

*** https://geanders.github.io/RProgrammingForResearch/entering-and-cleaning-data-1.html

*** https://www.r-bloggers.com/explore-your-dataset-in-r/

https://github.com/lgellis/MiscTutorial/blob/master/simple_eda/exploreData.Rmd

*** https://www.r-bloggers.com/renaming-all-files-in-a-folder-in-r/

https://www.brodrigues.co/blog/2018-02-16-importing_30gb_of_data/

Best Practices for Using Google Sheets in Your Data Project
https://matthewlincoln.net/2018/03/26/best-practices-for-using-google-sheets-in-your-data-project.html

13.1 Set seed for random

https://stats.stackexchange.com/questions/86285/random-number-set-seedn-in-r

13.2 Dates

https://stackoverflow.com/questions/58605726/convert-character-column-to-date-column-in-lubridate

https://community.rstudio.com/t/how-to-write-code-for-getting-start-date-and-end-date/44302/2

https://www.r-bloggers.com/date-formats-in-r/

13.3 Na

https://stackoverflow.com/questions/58547689/eliminate-nas-within-each-group

14 Python and R

https://m.youtube.com/watch?v=pjDGB9i7kyI

https://r4ds.had.co.nz/

R Markdown Python Engine

R Interface to Python

*** How to track and collaborate on R experiments with Neptune
https://medium.com/neptune-ml/how-to-track-and-collaborate-on-r-experiments-with-neptune-85d4b8c19596

15 HTML Widgets

*** http://www.htmlwidgets.org/

http://www.htmlwidgets.org/showcase_dygraphs.html

http://www.htmlwidgets.org/showcase_highcharts.html

http://jkunst.com/highcharter/

http://rich-iannone.github.io/DiagrammeR/

16 R Tutorials

Customizing R Startup
https://www.statmethods.net/interface/customizing.html

Tutorials for learning R
*** https://www.r-bloggers.com/how-to-learn-r-2/

*** https://cran.r-project.org/manuals.html

https://cran.r-project.org/doc/manuals/r-release/R-intro.pdf

https://stat545.com/r-basics.html

https://data-flair.training/blogs/learn-r-programming/

https://data-flair.training/blogs/debugging-in-r-programming/

https://data-flair.training/blogs/descriptive-statistics-in-r/

https://data-flair.training/blogs/data-structures-in-r/

Learning R in Seven Simple Steps (DataCamp)
https://www.datasciencecentral.com/profiles/blogs/learning-r-in-seven-simple-steps

R Tutorial Series: R Beginner’s Guide and R Bloggers Updates
https://www.r-bloggers.com/r-tutorial-series-r-beginners-guide-and-r-bloggers-updates/

R Tutorial
https://www.tutorialspoint.com/r/index.htm

swirl teaches you R programming and data science interactively, at your own pace, and right in the R console!
https://swirlstats.com

swirl_courses
https://github.com/swirldev/swirl_courses#swirl-courses

https://research.csiro.au/software/r-workshop-notes/

Digital Storytelling With R
http://www.storybench.org/tag/rstats/

https://github.com/ines/course-starter-r

https://masalmon.eu/2017/12/11/goodrpackages/#short-tutorials

*** https://www.infoworld.com/article/3411819/do-more-with-r-video-tutorials.html

*** Interactive Tutorials for R
https://rstudio.github.io/learnr/?utm_source=recordnotfound.com

A Guide to Getting International Statistics into R
https://erikgahner.dk/2019/a-guide-to-getting-international-statistics-into-r/

Statistics with R
http://zoonek2.free.fr/UNIX/48_R/all.html

Tutorials
https://www.diigo.com/profile/cengel/R?type=all&sort=updated

R Bootcamp
https://r-bootcamp.netlify.com/

Free online courses, tutorials and tools - Learn to use earth science and other data in R & Python
*** https://www.earthdatascience.org/

RStudio Cloud Primers
*** https://rstudio.cloud/learn/primers

adventr: An Adventure in Statistics interactive tutorials
*** http://milton-the-cat.rocks/home/adventr.html

An Adventure in Statistics
*** https://www.discoveringstatistics.com/statistics-hell-p/

Graphical Capabilities of R
https://hub.packtpub.com/graphical-capabilities-r/

How to write the first for loop in R
https://www.r-bloggers.com/how-to-write-the-first-for-loop-in-r/

How to build a website with Blogdown in R
*** http://www.storybench.org/how-to-build-a-website-with-blogdown-in-r/

How to access APIs in R
http://www.storybench.org/how-to-access-apis-in-r/

Scraping HTML tables and downloading files with R
http://www.storybench.org/scraping-html-tables-and-downloading-files-with-r/

16.1 Quick R (DataCamp)

https://www.statmethods.net/about/sitemap.html
https://www.statmethods.net/index.html

16.2 R Studio

R Studio increase Font size
https://community.rstudio.com/t/font-size-files-plot-packages-help-viewer-tabs/41583

RStudio Addin: Replace in Files
https://www.r-bloggers.com/rstudio-addin-replace-in-files/

16.3 R Environment

R Environment and Scope
https://www.datamentor.io/r-programming/environment-scope/

How to use objects from global environment in Rstudio Markdown
https://stackoverflow.com/questions/34029611/how-to-use-objects-from-global-environment-in-rstudio-markdown

16.4 R Conference Shares

University of Florida
https://github.com/ufrmeetup

useR! 2019 - Welcome - Keynote: Julia Stewart Lowndes
https://m.youtube.com/watch?feature=youtu.be&start=2710&v=Z8PqwFPqn6Y

useR! 2019 - Keynote: Julie Josse
https://m.youtube.com/watch?feature=youtu.be&start=1816&v=z8IuuDe5oXs

17 Data Viz

https://www.datacamp.com/community/tutorials/visualize-data-vim-package

*** https://www.datacamp.com/community/tutorials/data-visualization-highcharter-r

Raincloud plots: a multi-platform tool for robust data visualization
https://wellcomeopenresearch.org/articles/4-63/v1

Customizing Graphics and Creating a Bar Chart and Scatterplot in R
https://hub.packtpub.com/customizing-graphics-and-creating-bar-chart-and-scatterplot-r/

https://github.com/clauswilke/dataviz

https://serialmentor.com/dataviz/
https://serialmentor.com/dataviz/geospatial-data.html

18 ETC …

Version control
https://peerj.com/preprints/3159/

Tidy data
https://www.jstatsoft.org/article/view/v059i10/v59i10.pdf

R Ladies Slack Community
https://rladies-community-slack.herokuapp.com/

I “only” use R for descriptive stats — and that’s OK
https://rfortherestofus.com/2018/12/descriptive-stats-r/

Query openrouteservice from R
https://maps.openrouteservice.org/
https://giscience.github.io/openrouteservice-r/articles/openrouteservice.html#optimization

*** write r-blog post without having a blog
http://r-posts.com/

Organizing, Clarifying and Communicating the R Data Analyses
https://hub.packtpub.com/organizing-clarifying-and-communicating-r-data-analyses/

Downloading Fitbit Data Histories with R
https://www.r-bloggers.com/downloading-fitbit-data-histories-with-r-2/

Draw your Data and Download
http://drawdata.xyz/

https://www.r-bloggers.com/a-full-rstudio-server-setup-for-data-science-in-5-minutes/

Vectorize In R
https://wetlandscapes.com/

Topics in Data Visualization > Modules
https://canvas.instructure.com/courses/946353/modules#module_962002

18.1 Music

https://leonawicz.github.io/tabr/

https://community.rstudio.com/t/using-instead-of/43255

18.2 Audio

*** Audio from graph https://coolbutuseless.github.io/2019/10/04/introducing-devoutaudio-an-experimental-package-for-rendering-graphics-as-audio/

18.3 Weather

*** https://cran.r-project.org/web/packages/weathercan/index.html

https://www.google.ca/search?client=safari&hl=en-ca&sxsrf=ACYBGNRGYI_on_MQmpJ7GEwSM05gNnRdAQ%3A1573946634282&ei=CoXQXdLuEJC_0PEPzLKiyAE&q=analysis+of+weather+time+series+in+r&oq=analysis+of+weather+time+series+in+r&gs_l=mobile-gws-wiz-serp.3…7501.9948..11336…0.1..0.102.643.7j1……0….1………0i71j35i304i39j0i13i5i30j0i8i13i30j30i10.6mdD7eNyVIQ

*** https://github.com/ropensci/weathercan

http://ropensci.github.io/weathercan/

18.4 CV

Building a data-driven CV with R

CV built using RMarkdown and pagedown package- N Strayer

CV - Sam Abbott

Templates and tools for making a Resume CV
https://pkg.mitchelloharawild.com/vitae/

*** https://livefreeordichotomize.com/2019/09/04/building_a_data_driven_cv_with_r/

https://ccgilroy.github.io/resume/

https://github.com/mitchelloharawild/vitae

18.5 R Help

R Search https://rseek.org/

R Search Engine - DSC Data Science Central
https://www.datasciencecentral.com/page/search?q=R&cx=007889287169707156432%3A04zouenp6u0&ie=UTF-8&cof=FORID%3A11%3BNB%3A1&sa=Search

R package? GPS time Is it day or night?
https://twitter.com/lilybentley/status/1194573171220996097?s=21

https://stackoverflow.com/questions/58605034/increase-plot-layout-and-reduce-the-legend-list

R not reading in projection info on Mac OSX
https://gis.stackexchange.com/questions/19064/opening-shapefile-in-r

Diagnosing a non-responsive RStudio console
https://community.rstudio.com/t/diagnosing-a-non-responsive-rstudio-console/4601/9

18.6 Twitter

*** https://happygitwithr.com/

https://twitter.com/lucystats/status/1193964858007523328?s=21

https://www.rdocumentation.org/packages/twitteR/versions/1.1.9

http://www.storybench.org/get-twitter-data-rtweet-r/

R package? GPS time Is it day or night?
https://twitter.com/lilybentley/status/1194573171220996097?s=21

https://twitter.com/jasminehanye/status/1194282511012171777?s=21

21 Recipes for Mining Twitter Data with rtweet
https://rud.is/books/21-recipes/

19 R Packages

*** https://www.haktansuren.com/installing-r-package-fixing-package-xxx-is-not-available-for-r-version-x-y-z-warning/

https://rfortherestofus.com/2019/10/how-to-make-functions-in-r/

https://medium.com/analytics-vidhya/advanced-data-wrangling-in-r-4-f98693b92851

https://medium.com/analytics-vidhya/group-manipulation-in-r-3-5554a0c1b544?

https://medium.com/analytics-vidhya/statistical-visualization-in-r-2-9e9070bcdecf?

https://medium.com/analytics-vidhya/many-ways-of-reading-data-into-r-1-52b02825cb27?

https://stackoverflow.com/questions/25721884/how-should-i-deal-with-package-xxx-is-not-available-for-r-version-x-y-z-wa

https://cran.r-project.org/web/packages/data.table/vignettes/datatable-intro.html

19.1 Details

https://www.hvitfeldt.me/pkgcal2019/3/
https://yonicd.github.io/details/articles/index.html
https://yonicd.github.io/details/articles/custom.html
https://yonicd.github.io/details/articles/sessioninfo.html

*** https://www.hvitfeldt.me/packagecalendar/2019/
https://www.hvitfeldt.me/packagecalendar/2018/

*** https://hilaryparker.com/2014/04/29/writing-an-r-package-from-scratch/

https://hilaryparker.com/2014/05/27/sunsets-in-google-calendar-using-r/

Installing R packages
https://www.r-bloggers.com/installing-r-packages/

*** List r packages installed before reinstalling

# Before re-installing R, save a list of all your packages (otherwise you'll have to do it by hand)  
#packs <- installed.packages()  
#packs <- mypacks[c(1:2),]  
# save packs as .csv or other format
# reload .csv
#install.packages(packs[,1])

*** {beepr} for victory noises when your scripts complete
https://cran.r-project.org/web/packages/beepr/index.html
https://www.r-project.org/nosvn/pandoc/beepr.html
https://cran.r-project.org/web/packages/beepr/beepr.pdf

The drake R Package User Manual

learnr
https://blog.rstudio.com/2017/07/11/introducing-learnr/

CRAN packages
http://dirk.eddelbuettel.com/cranberries/cran/updated/index.html

https://cran.r-project.org/web/packages/janeaustenr/index.html

https://stat.ethz.ch/R-manual/R-devel/library/base/html/system.html
https://www.rdocumentation.org/packages/base/versions/3.6.1/topics/system
https://stat.ethz.ch/R-manual/R-devel/library/base/html/system2.html

https://swirlstats.com/students.html https://github.com/swirldev/swirl_courses#swirl-courses

19.2 Tables

https://cran.r-project.org/web/packages/expss/index.html
https://cran.r-project.org/web/packages/expss/expss.pdf

https://cran.r-project.org/web/packages/huxtable/index.html
https://cran.r-project.org/web/packages/huxtable/huxtable.pdf

https://cran.r-project.org/web/packages/polite/index.html
https://cran.r-project.org/web/packages/polite/polite.pdf

https://cran.r-project.org/web/packages/searcher/searcher.pdf

*** Did you know, using “searcher” package, you could automatically to search stackoverflow , google, GitHub and many more sites for errors , packages or topics

RSQLite: ‘SQLite’ Interface for R
https://cran.r-project.org/web/packages/RSQLite/

*** The R Commander: A Basic-Statistics GUI for R https://socialsciences.mcmaster.ca/jfox/Misc/Rcmdr/

Rayshader
https://github.com/PennMUSA/MasterClass2019_3DMappingAndViz/blob/master/MusaMasterclass.md

https://cran.r-project.org/web/packages/beepr/beepr.pdf

xkcd: Plotting ggplot2 Graphics in an XKCD Style
https://cran.r-project.org/web/packages/xkcd/index.html

*** curated list of awesome R packages, frameworks and software
https://awesome-r.com/

API client for the Internet Archive
https://lincolnmullen.com/software/internetarchive/

ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12628

assign {base} - Assign a Value to a Name
https://stat.ethz.ch/R-manual/R-devel/library/base/html/assign.html

summary {base} Object Summaries
https://stat.ethz.ch/R-manual/R-devel/library/base/html/summary.html